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ICV is indirectly measured via computed tomography &#40;CT&#41; scans&#46; ICV measurements using CT scans have been reported in the literatures&#46;<a class="elsevierStyleCrossRefs" href="#bib0180"><span class="elsevierStyleSup">1&#44;4</span></a> Most commonly&#44; the manual method was carried out to determine the ICV&#46; The manual method is considered the gold standard in measuring ICV&#46;<a class="elsevierStyleCrossRefs" href="#bib0190"><span class="elsevierStyleSup">3&#8211;8</span></a> It is used as the reference method in comparison with any new measurement methods&#46; The manual method is regarded the most accurate method to measure ICV as it assesses every slice of the image&#46; The ICV is the sum of the area of all slices multiplied by its slice thickness&#46; The area of each slice could be measured by manually tracing the intracranial cavity or using the segmentation procedure&#46; Manual tracing is performed by using the computer&#39;s mouse to trace the boundary of the intracranial region on each slice&#46; Although this manual method is precise and accurate&#44; its major limitation remains in the fact that it is tedious&#44; time consuming&#44; and requires experience&#46;<a class="elsevierStyleCrossRefs" href="#bib0220"><span class="elsevierStyleSup">9&#44;10</span></a></p><p id="par0015" class="elsevierStylePara elsevierViewall">As manually tracing the boundary of each slice is tedious&#44; other techniques to segment the intracranial region were introduced&#46; One of them is the semi-automatic segmentation using region growing&#46;<a class="elsevierStyleCrossRefs" href="#bib0230"><span class="elsevierStyleSup">11&#44;12</span></a> This method is also known as pixel-based image segmentation as it involves an initial seed point&#46; Starting with a pixel or a group of pixels as the seed point&#44; the neighbouring pixels are examined&#46; If a neighbouring pixel meets certain criteria &#40;for example&#44; they have similar pixel value&#41;&#44; it is added to the group and if it does not&#44; it will not be included as part of the region&#46; This process is continued until no neighbouring pixels can be added to the group&#46; Thus&#44; a region is defined&#46;</p><p id="par0020" class="elsevierStylePara elsevierViewall">The aim of the region growing method is to group pixels of similar value into a defined region according to some assigned criteria&#46; Although the region growing method is faster than manually tracing the boundaries&#44; it would not help much to save time in 1-mm CT scan slices as the process has to be repeated about 200 times&#46; This process is tedious and time consuming&#46; To overcome this problem&#44; we investigated shape-based interpolation method<a class="elsevierStyleCrossRef" href="#bib0240"><span class="elsevierStyleSup">13</span></a> with 1-in-10 sampling strategy to rapidly estimate ICV for use in clinical setting&#46;</p><p id="par0025" class="elsevierStylePara elsevierViewall">One of the significant applications of the ICV measurement is in the management of patients undergoing decompressive craniectomy &#40;DC&#41;&#46; A DC surgery is a lifesaving procedure that removes a section of the skull to relieve intracranial pressure &#40;ICP&#41; secondary to trauma&#44; stroke&#44; and subarachnoid haemorrhage&#46;<a class="elsevierStyleCrossRefs" href="#bib0245"><span class="elsevierStyleSup">14&#44;15</span></a> Following DC&#44; the brain expands through the skull defect created by DC&#44; resulting in transcalvarial herniation&#46; Thus&#44; a few studies were conducted in volumetric comparisons of ICVs&#44;<a class="elsevierStyleCrossRefs" href="#bib0255"><span class="elsevierStyleSup">16&#8211;18</span></a> or herniation volume&#44;<a class="elsevierStyleCrossRef" href="#bib0270"><span class="elsevierStyleSup">19</span></a> in addition to ICPs to manage patients with DC surgery&#46;</p></span><span id="sec0010" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0070">Materials and methods</span><p id="par0030" class="elsevierStylePara elsevierViewall">Traumatic and non-traumatic cases requiring decompressive craniectomy were evaluated in this study&#46; 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An exclusion criterion was CT images with incomplete brain images&#46; A total of 67 CT head scans of patients aged between 15 and 86 years old were retrieved from the Picture Archiving and Communication System &#40;PACS&#41; server housed at the Radiology Department&#44; Hospital USM&#46; Twelve patients were excluded because the images did not satisfy the criteria&#46; Thus&#44; 55 patients &#40;41 males&#44; 14 females&#41; were included in this study&#46;</p><p id="par0035" class="elsevierStylePara elsevierViewall">CT images were retrieved from the PACS Server to a Dell Precision T7500 workstation in Digital Imaging and Communications in Medicine &#40;DICOM&#41; format&#46; All measurements were performed using open source MITK 3M3 image analysis framework&#46;<a class="elsevierStyleCrossRefs" href="#bib0275"><span class="elsevierStyleSup">20&#44;21</span></a> In this study&#44; the ICV was defined as the volume of the intracranial cavity from the vertex to the foramen magnum&#46;<a class="elsevierStyleCrossRefs" href="#bib0190"><span class="elsevierStyleSup">3&#44;22</span></a></p><span id="sec0015" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0075">Manual method</span><p id="par0040" class="elsevierStylePara elsevierViewall">The DICOM data was loaded into MITK 3M3 image analysis framework&#46; 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1</a>&#41;&#44; which could lead to over estimation of ICV&#46;</p><elsevierMultimedia ident="fig0005"></elsevierMultimedia><p id="par0045" class="elsevierStylePara elsevierViewall">The process was repeated in each axial slice&#44; from the vertex to the foramen magnum&#44; until the entire region of the intracranial area was segmented &#40;<a class="elsevierStyleCrossRef" href="#fig0010">Fig&#46; 2</a>&#41;&#46; For each CT data&#44; there were about 200 axial slices on average&#46;</p><elsevierMultimedia ident="fig0010"></elsevierMultimedia><p id="par0050" class="elsevierStylePara elsevierViewall">The segmentation for the post-operative CT data followed the same principle for the pre-operative CT data&#46; The only difference was that the amount of over-segmentation was bigger&#44; thus taking a lot more time for manual editing&#46; For a normal skull with no defects&#44; only a few slices were needed for the manual editing&#46; However&#44; for the post-operative CT data&#44; a lot more time was consumed to delineate the intracranial area by manually drawing the line &#40;correction tool&#41; along the dura mater &#40;<a class="elsevierStyleCrossRef" href="#fig0015">Fig&#46; 3</a>&#41;&#46;</p><elsevierMultimedia ident="fig0015"></elsevierMultimedia><p id="par0055" class="elsevierStylePara elsevierViewall">The segmentation process was repeated on all axial slices&#46; This process was periodically assessed for over-segmentation by comparing the segmented images in the coronal view &#40;<a class="elsevierStyleCrossRef" href="#fig0020">Fig&#46; 4</a>&#41;&#46;</p><elsevierMultimedia ident="fig0020"></elsevierMultimedia></span><span id="sec0020" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0080">Shape-based interpolation method</span><p id="par0060" class="elsevierStylePara elsevierViewall">The 1-in-10 sampling strategy was used to obtain an estimate of the ICV before applying the shape-based interpolation method&#46; Manual segmentation was conducted on every 10th slice in the axial plane for the 1-in-10 sampling strategy&#46; For this sampling strategy&#44; the number of slices to be processed was reduced considerably from about 200 slices using manual method to about 20 slices as shown in <a class="elsevierStyleCrossRef" href="#fig0025">Fig&#46; 5</a>&#46; The ICV was obtained when all slices were segmented after the interpolation process&#46; For the post-operative CT data using shape-based interpolation method&#44; the process was similar to the pre-operative CT data &#40;<a class="elsevierStyleCrossRef" href="#fig0030">Fig&#46; 6</a>&#41;&#46;</p><elsevierMultimedia ident="fig0025"></elsevierMultimedia><elsevierMultimedia ident="fig0030"></elsevierMultimedia></span><span id="sec0025" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0085">Statistical analyses</span><p id="par0065" class="elsevierStylePara elsevierViewall">The IBM SPSS Statistics version 20 was used for statistical analyses&#46; Descriptive statistics were described in mean and standard deviation&#46; Measurement of the 55 ICV for each CT data was carried out by one observer &#40;JYA&#41; and validated by our co-authors &#40;AGM &#38; ZAR&#41;&#46; The ICV was measured by segmenting every slice of the CT images&#44; and compared with estimated ICV calculated using shape-based interpolation method&#46; An independent <span class="elsevierStyleItalic">t</span> test was conducted to compare ICV measurements between two different methods&#46; The calculation using shape-based interpolation method was repeated three times for reliability analysis using two-way mixed effect intraclass correlations coefficient &#40;ICC&#41;&#46; Bland&#8211;Altman plot was used to measure agreement between the methods for both pre- and post-operative ICV measurements&#46; Each measurement of the same CT scan image was carried out at different times &#40;about one month apart&#41; and blind to each measurement&#46; For confidentiality&#44; scans were not identified by the patient&#39;s name&#46;</p></span></span><span id="sec0030" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0090">Results</span><p id="par0070" class="elsevierStylePara elsevierViewall"><a class="elsevierStyleCrossRef" href="#tbl0005">Table 1</a> presents the results of ICV measurements using the two different methods&#44; the manual and shape-based interpolation method&#46; An independent <span class="elsevierStyleItalic">t</span> test was conducted to compare the ICV measurements using different methods&#46; The mean ICV &#40;&#177;SD&#41; were 1341&#46;1<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>122&#46;1<span class="elsevierStyleHsp" style=""></span>ml &#40;manual method&#41; and 1344&#46;11<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>122&#46;6<span class="elsevierStyleHsp" style=""></span>ml &#40;shape-based interpolation method&#41; for preoperative CT data&#46; The mean ICV &#40;&#177;SD&#41; were 1396&#46;4<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>132&#46;4<span class="elsevierStyleHsp" style=""></span>ml &#40;manual method&#41; and 1400&#46;53<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>132&#46;1<span class="elsevierStyleHsp" style=""></span>ml &#40;shape-based interpolation method&#41; for post-operative CT data&#46; No significant difference was found in ICV measurement using the manual and the shape-based interpolation methods &#40;<span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>&#46;983 for pre-op&#44; and <span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>&#46;960 for post-op&#41;&#46;</p><elsevierMultimedia ident="tbl0005"></elsevierMultimedia><p id="par0075" class="elsevierStylePara elsevierViewall">The Intrarater correlation coefficients &#40;ICC&#41; are shown in <a class="elsevierStyleCrossRef" href="#tbl0010">Table 2</a>&#46; The three observation measurements were highly correlated within-subjects for pre-operative and post-operative CT data&#46;</p><elsevierMultimedia ident="tbl0010"></elsevierMultimedia><p id="par0080" class="elsevierStylePara elsevierViewall">The correlation coefficients are shown in <a class="elsevierStyleCrossRef" href="#tbl0015">Table 3</a>&#46; There were highly significant correlations between the manual and shape-based interpolation methods for both pre-operative and post-operative CT data&#46; This means the shape-based interpolation method is comparable with the manual method if used to measure ICV for either pre- or post-operative CT data of DC patients&#46;</p><elsevierMultimedia ident="tbl0015"></elsevierMultimedia><p id="par0085" class="elsevierStylePara elsevierViewall"><a class="elsevierStyleCrossRef" href="#fig0035">Fig&#46; 7</a> shows the scatter plot between the ICV measurements of manual method and shape-based interpolation method for pre-operative CT data&#46; The two methods appear to be well correlated with a coefficient of correlation that is highly significant &#40;<span class="elsevierStyleItalic">r</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>1&#46;000&#44; <span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#60;<span class="elsevierStyleHsp" style=""></span>&#46;001&#41;&#46;</p><elsevierMultimedia ident="fig0035"></elsevierMultimedia><p id="par0090" class="elsevierStylePara elsevierViewall"><a class="elsevierStyleCrossRef" href="#fig0040">Fig&#46; 8</a> shows the scatter plot between the ICV measurements of manual method and shape-based interpolation method for post-operative CT data&#46; The two methods appear to be well correlated with a coefficient of correlation that is highly significant &#40;<span class="elsevierStyleItalic">r</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>0&#46;999&#44; <span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#60;<span class="elsevierStyleHsp" style=""></span>&#46;001&#41;&#46;</p><elsevierMultimedia ident="fig0040"></elsevierMultimedia><p id="par0095" class="elsevierStylePara elsevierViewall">The agreements between the two methods for pre-operative ICV measurements were evaluated using Bland&#8211;Altman plot as shown in <a class="elsevierStyleCrossRef" href="#fig0045">Fig&#46; 9</a>&#46;</p><elsevierMultimedia ident="fig0045"></elsevierMultimedia><p id="par0100" class="elsevierStylePara elsevierViewall">For each DC patient data&#44; the mean of the ICV measurements using manual and shape-based interpolation methods is plotted on the <span class="elsevierStyleItalic">x</span>-axis&#44; against the difference between the measurement methods on the <span class="elsevierStyleItalic">y</span>-axis&#46; The output of the One-sample <span class="elsevierStyleItalic">t</span>-test analysis provides all the relevant data to draw a Bland&#8211;Altman plot&#46;</p><p id="par0105" class="elsevierStylePara elsevierViewall">The dashed line<span class="elsevierStyleHsp" style=""></span>&#43;<span class="elsevierStyleHsp" style=""></span>1&#46;96SD represent the mean systematic difference between manual and shape-based interpolation methods&#44; which amount to &#8722;3&#46;06 &#40;95&#37; CI&#58; 3&#46;55&#8211;5&#46;11&#41;&#46; It appears that there was no statistically significant difference in mean&#46; The two-dotted line above and below the mean line represent the limits of the agreement&#44; and these are drawn at mean<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>1&#46;96<span class="elsevierStyleHsp" style=""></span>&#215;<span class="elsevierStyleHsp" style=""></span>SD&#46; We can interpret mean &#40;&#8722;3&#46;06&#41; as the systematic error and 1&#46;96<span class="elsevierStyleHsp" style=""></span>&#215;<span class="elsevierStyleHsp" style=""></span>SD as the random error&#46; If the ICV measurements using manual and shape-based interpolation method differ a lot&#44; the SD of the differences will be large and the lines will be further away from the mean line&#46; The limits of agreement here are &#8722;10&#46;45 to 4&#46;33<span class="elsevierStyleHsp" style=""></span>ml&#46; As these are expressed in the units of measurement&#44; we have a direct indication of the size of the measurement error&#46; <a class="elsevierStyleCrossRef" href="#fig0045">Fig&#46; 9</a> shows that good agreement is obtained between manual versus shape-based interpolation methods for pre-operative CT data&#44; according to the Bland&#8211;Altman plot&#46;</p><p id="par0110" class="elsevierStylePara elsevierViewall">The agreements between the two methods for post-operative ICV measurements were evaluated using Bland&#8211;Altman plot as shown in <a class="elsevierStyleCrossRef" href="#fig0050">Fig&#46; 10</a>&#46;</p><elsevierMultimedia ident="fig0050"></elsevierMultimedia><p id="par0115" class="elsevierStylePara elsevierViewall">The Bland&#8211;Altman plot showed that 95&#37; of differences of ICV measurements using manual and shape-based interpolation methods were between &#8722;12&#46;62 and 4&#46;28<span class="elsevierStyleHsp" style=""></span>ml&#46; <a class="elsevierStyleCrossRef" href="#fig0050">Fig&#46; 10</a> shows that good agreement is obtained between manual versus shape-based interpolation methods using 1-in-10 sampling strategy for post-operative CT data&#46;</p></span><span id="sec0035" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0095">Discussions</span><p id="par0120" class="elsevierStylePara elsevierViewall">Intracranial volume is one of the measures to evaluate brain size&#59; it is particularly useful in the management of patients undergoing DC where there will be changes in the shape and size of the brain&#46; Several methods were used to measure ICV and in this study we aimed to measure the pre- and post-operative ICV of DC patients using a rapid and reliable method&#46; The pre- and post-operative ICV of DC patients were first measured using the manual method as the gold standard&#44; and then compared with the shape-based interpolation method using 1-in-10 sampling strategy&#46;</p><p id="par0125" class="elsevierStylePara elsevierViewall">The manual method is considered the gold standard in measuring ICV&#46;<a class="elsevierStyleCrossRefs" href="#bib0190"><span class="elsevierStyleSup">3&#8211;8</span></a> It is used as the reference method in comparison with any new measurement methods&#46; Most of these studies<a class="elsevierStyleCrossRefs" href="#bib0190"><span class="elsevierStyleSup">3&#44;5&#8211;7&#44;24</span></a> measured ICV on MRI compared to CT&#46;<a class="elsevierStyleCrossRefs" href="#bib0185"><span class="elsevierStyleSup">2&#44;4&#44;25</span></a> The automatic method to measure ICV is only suitable for MRI data&#44;<a class="elsevierStyleCrossRefs" href="#bib0190"><span class="elsevierStyleSup">3&#44;5&#44;24</span></a> and studies to automatically measure ICV on defected skull of CT data is scarce&#46;</p><p id="par0130" class="elsevierStylePara elsevierViewall">ICV measurements using CT scans have been reported in the literatures&#46;<a class="elsevierStyleCrossRefs" href="#bib0180"><span class="elsevierStyleSup">1&#44;4</span></a> Most commonly&#44; the manual method was carried out to determine the ICV&#46; Several studies manually trace the borders to delineate the intracranial cavity<a class="elsevierStyleCrossRefs" href="#bib0190"><span class="elsevierStyleSup">3&#44;6&#44;7&#44;25</span></a>&#59; this method is more time consuming&#46; In our study&#44; instead of manually tracing the borders of the intracranial area&#44; region growing method was used to segment the intracranial area on every slice&#46; The process was semi-automatic where the user just point the mouse to the region of interest and the intracranial area would be segmented automatically&#46; The benefit of this method compared to manually tracing the borders is the process is faster with only one click&#46; The amount of time needed to segment each slice was also less compared to manually tracing the borders as it is semi-automatic&#46; Furthermore&#44; based on our results&#44; this method provides a good ICV measurement&#46;</p><p id="par0135" class="elsevierStylePara elsevierViewall">On the other hand&#44; according to Adamson et al&#46;&#44;<a class="elsevierStyleCrossRef" href="#bib0305"><span class="elsevierStyleSup">26</span></a> region-growing methods are prone to &#8220;leaking&#8221;&#44; where the segmentation boundary penetrates into back-ground voxels or into the brainstem&#44; or both&#46; Therefore&#44; manual editing was necessary to correct segmentation leakage which was tedious and time consuming for large datasets&#44; particularly for DC data with cranial defects&#46; To overcome this problem&#44; is to segment the images on every <span class="elsevierStyleItalic">n</span>th slice&#46; The loss of precision when segmenting every <span class="elsevierStyleItalic">n</span>th slice has been evaluated by Eritaia et al&#46;&#44;<a class="elsevierStyleCrossRef" href="#bib0210"><span class="elsevierStyleSup">7</span></a> where it was shown that it is possible to get reasonable accurate ICV measurements without segmenting every slice&#46; They reported that there was a positive relationship between the number of slices used to estimate ICV and the accuracy of that measurement&#46; As the number of slices sampled decreased&#44; ICV between the estimated ICV and the actual ICV also decreased&#46; In addition&#44; the variance of the estimated ICVs increased&#46; They also stated that the ICV can be confidently estimated using every 10th slices without significant loss of accuracy&#44; which should significantly save time&#46; Our results showed that these techniques are comparable to the manual method&#46; Indeed&#44; the time spent to measure ICV using the 1-in-10 sampling strategy was reduced significantly&#46; Using the manual method&#44; about 200 slices were assessed&#44; compared to just 20 slices in the 1-in 10 sampling strategy&#46;</p><p id="par0140" class="elsevierStylePara elsevierViewall">ICV measurement of CT images are normally performed using either commercial software such as BrainLAB iPlan software<a class="elsevierStyleCrossRefs" href="#bib0310"><span class="elsevierStyleSup">27&#44;28</span></a> or in-house software&#46;<a class="elsevierStyleCrossRefs" href="#bib0320"><span class="elsevierStyleSup">29&#44;30</span></a> While the in-house software are only limited to users from that particular institution&#44; the commercial software is very expensive&#46; For instance&#44; Kenning et al&#46;<a class="elsevierStyleCrossRef" href="#bib0310"><span class="elsevierStyleSup">27</span></a> used commercial BrainLAB iPlan software for volumetric analysis of DC patients&#59; this software is rather expensive and cannot be afforded by this institution&#46; Thus&#44; in this study&#44; MITK 3M3 was used for the ICV estimation using both manual and shape-based interpolation methods&#46; This software is an open source medical image processing framework that fulfils a specific and pressing need of craniofacial imaging research by providing a combination of manual and semi-automatic tools for extracting structures of interest&#46;</p><p id="par0145" class="elsevierStylePara elsevierViewall">A few studies to estimate the ICV on CT scans applying open source software have been conducted&#46;<a class="elsevierStyleCrossRefs" href="#bib0185"><span class="elsevierStyleSup">2&#44;23&#44;31</span></a> They measured ICV of 30 normal subjects&#44;<a class="elsevierStyleCrossRef" href="#bib0185"><span class="elsevierStyleSup">2</span></a> 5 dry skulls<a class="elsevierStyleCrossRef" href="#bib0330"><span class="elsevierStyleSup">31</span></a> and 12 subjects with intracranial haemorrhage&#46;<a class="elsevierStyleCrossRef" href="#bib0290"><span class="elsevierStyleSup">23</span></a> However&#44; only normal skulls were measured in these studies&#44; unlike the present study where we included the measurement of patients after DC surgery where part of the skull is removed&#46; Our study is more challenging as loss of some parts of the bony structures of the skull makes the segmentation of the intracranial areas difficult&#46;</p><p id="par0150" class="elsevierStylePara elsevierViewall">As in Ricard et al&#46;<a class="elsevierStyleCrossRef" href="#bib0335"><span class="elsevierStyleSup">32</span></a> study&#44; open source ITK-SNAP was used to measure ICV&#46; ITK-SNAP uses active contour segmentation and offers automatic segmentation of the ICV&#46; The active contour initialization was performed by placing a sphere in the intracranial cavity&#46; Each boundary point of this sphere was moved iteratively until the cranial cavity was full and the algorithm stopped when the entire boundary was reconstructed&#46; User had to eliminate the excess of the active contour through the foramina of skull base using cutting planes&#46; However&#44; this segmentation could only work with the normal skull or pre-operative DC patients&#46; It was impossible to eliminate the excess of the ICV from the skull defect in post-operative DC patients using the same cutting planes&#46; Therefore&#44; this method is appropriate to measure the ICV of normal patients with no skull defects but not for the post-operative DC patients&#46;</p><p id="par0155" class="elsevierStylePara elsevierViewall">There are several studies which involved measuring ICV of the defect skulls such as craniosynostosis&#46; Ritvanen et al&#46;<a class="elsevierStyleCrossRef" href="#bib0315"><span class="elsevierStyleSup">28</span></a> proposed the use of mesh-based method to measure ICV in patients with craniosynostosis from CT images&#46; The software they used to measure ICV was the commercial Amira software&#46; In other similar study&#44; Hill et al&#46;<a class="elsevierStyleCrossRef" href="#bib0340"><span class="elsevierStyleSup">33</span></a> used another commercial software&#44; Analyze&#44; to measure ICV of unicoronal craniosynostosis patients from MRI images while Fischer et al&#46;&#44;<a class="elsevierStyleCrossRef" href="#bib0345"><span class="elsevierStyleSup">34</span></a> Maltese et al&#46;&#44;<a class="elsevierStyleCrossRef" href="#bib0350"><span class="elsevierStyleSup">35</span></a> and Wikberg et al&#46;<a class="elsevierStyleCrossRef" href="#bib0285"><span class="elsevierStyleSup">22</span></a> used Matlab to measure total intracranial volume and frontal volume of sagittal synostosis&#44; craniosynostosis and metopic synostosis patients from CT images&#44; respectively&#46; Similarly&#44; Anderson et al&#46;<a class="elsevierStyleCrossRef" href="#bib0320"><span class="elsevierStyleSup">29</span></a> measured ICV of sagittal craniosynostosis patients using their in-house Persona Software&#46; The studies mentioned above all used either commercial or in-house software to measure ICV in patients with skull defect&#46; As they are not available for our use&#44; we opted for MITK 3M3&#44; which is an open source software capable of measuring ICV in defective skull&#46;</p><p id="par0160" class="elsevierStylePara elsevierViewall">The shape-based interpolation method in this study applied semi-automatic segmentation with manual editing which was observer-dependent&#46; This finding could be further improved via an implementation of inter-observer agreement to validate this method&#46; Therefore&#44; both intra- and inter-observer agreements should be considered in future studies&#46;</p></span><span id="sec0040" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0100">Conclusion</span><p id="par0165" class="elsevierStylePara elsevierViewall">In this study&#44; the amount of slices used for ICV estimation were reduced from about 200 to 20 slices using the 1-in-10 sampling strategy on CT images with 1-mm slice thickness&#46; Further investigation could be done using lesser slices such as 1-in-20 sampling strategy which could reduce the number of slices to 10 slices&#44; or a few other sampling strategies to find the optimum amount of slices that could accurately estimate ICV based on the shape-based interpolation method&#46;</p><p id="par0170" class="elsevierStylePara elsevierViewall">In conclusion&#44; the results of this study confirmed that the shape-based interpolation method with 1-in-10 sampling strategy gave comparable results in estimating ICV compared to the manual gold standard&#46; Thus&#44; this method could be used in clinical settings for a rapid and reliable ICV estimation of DC patients&#46;</p></span><span id="sec0045" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0105">Ethical standards and patient consent</span><p id="par0175" class="elsevierStylePara elsevierViewall">We declare that all human and animal studies have been approved by the Ethics and Research Committee USM&#44; reference number USMKK&#47;PPP&#47;JEPeM &#40;246&#46;3&#91;13&#93;&#41; dated 9th January 2013 and have therefore been performed in accordance with the ethical standards laid down in the 1964 Declaration of Helsinki and its later amendments&#46; We declare that all patients gave informed consent prior to inclusion in this study&#46;</p></span><span id="sec0050" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0110">Conflict of interest</span><p id="par0180" class="elsevierStylePara elsevierViewall">The authors declare that they have no conflict of interest&#46;</p></span></span>"
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        "resumen" => "<span id="abst0005" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0010">Introduction</span><p id="spar0005" class="elsevierStyleSimplePara elsevierViewall">Intracranial volume &#40;ICV&#41; is an important tool in the management of patients undergoing decompressive craniectomy &#40;DC&#41; surgery&#46; The aim of this study was to validate ICV measurement applying the shape-based interpolation &#40;SBI&#41; method using open source software on computed tomography &#40;CT&#41; images&#46;</p></span> <span id="abst0010" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0015">Methods</span><p id="spar0010" class="elsevierStyleSimplePara elsevierViewall">The pre- and post-operative CT images of 55 patients undergoing DC surgery were analyzed&#46; The ICV was measured by segmenting every slice of the CT images&#44; and compared with estimated ICV calculated using the 1-in-10 sampling strategy and processed using the SBI method&#46; An independent <span class="elsevierStyleItalic">t</span> test was conducted to compare the ICV measurements between the two different methods&#46; The calculation using this method was repeated three times for reliability analysis using the intraclass correlations coefficient &#40;ICC&#41;&#46; The Bland&#8211;Altman plot was used to measure agreement between the methods for both pre- and post-operative ICV measurements&#46;</p></span> <span id="abst0015" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0020">Results</span><p id="spar0015" class="elsevierStyleSimplePara elsevierViewall">The mean ICV &#40;&#177;SD&#41; were 1341&#46;1<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>122&#46;1<span class="elsevierStyleHsp" style=""></span>ml &#40;manual&#41; and 1344&#46;11<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>122&#46;6<span class="elsevierStyleHsp" style=""></span>ml &#40;SBI&#41; for the preoperative CT data&#46; The mean ICV &#40;&#177;SD&#41; were 1396&#46;4<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>132&#46;4<span class="elsevierStyleHsp" style=""></span>ml &#40;manual&#41; and 1400&#46;53<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>132&#46;1<span class="elsevierStyleHsp" style=""></span>ml &#40;SBI&#41; for the post-operative CT data&#46; No significant difference was found in ICV measurements using the manual and the SBI methods &#40;<span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>&#46;983 for pre-op&#44; and <span class="elsevierStyleItalic">p</span><span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>&#46;960 for post-op&#41;&#46; The intrarater ICC showed a significant correlation&#59; ICC<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>1&#46;00&#46; The Bland&#8211;Altman plot showed good agreement between the manual and the SBI method&#46;</p></span> <span id="abst0020" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0025">Conclusion</span><p id="spar0020" class="elsevierStyleSimplePara elsevierViewall">The shape-based interpolation method with 1-in-10 sampling strategy gave comparable results in estimating ICV compared to manual segmentation&#46; Thus&#44; this method could be used in clinical settings for rapid&#44; reliable and repeatable ICV estimations&#46;</p></span>"
        "secciones" => array:4 [
          0 => array:2 [
            "identificador" => "abst0005"
            "titulo" => "Introduction"
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          1 => array:2 [
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            "titulo" => "Methods"
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          2 => array:2 [
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            "titulo" => "Results"
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        "titulo" => "Resumen"
        "resumen" => "<span id="abst0025" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0035">Introducci&#243;n</span><p id="spar0025" class="elsevierStyleSimplePara elsevierViewall">El volumen intracraneal &#40;ICV&#41; constituye una importante herramienta para el tratamiento de los pacientes sometidos a craneotom&#237;a descompresiva &#40;CD&#41;&#46; El objetivo de este estudio fue validar la medici&#243;n del ICV aplicando el m&#233;todo de interpolaci&#243;n basado en formas &#40;SBI&#41;&#44; utilizando <span class="elsevierStyleItalic">software</span> de c&#243;digo abierto en las im&#225;genes de tomograf&#237;a computarizada &#40;TC&#41;&#46;</p></span> <span id="abst0030" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0040">M&#233;todos</span><p id="spar0030" class="elsevierStyleSimplePara elsevierViewall">Se analizaron las im&#225;genes pre- y postoperatorias de TC de 55 pacientes sometidos a CD&#46; Se midi&#243; el ICV segmentando cada corte de las im&#225;genes de TC&#44; compar&#225;ndose con el ICV estimado calculado utilizando la estrategia de muestreo 1 de 10&#44; y proces&#225;ndose mediante el m&#233;todo SBI&#46; Se realiz&#243; una prueba t independiente para comparar las mediciones de ICV entre los 2 m&#233;todos&#46; Se repiti&#243; 3 veces el c&#225;lculo con este m&#233;todo&#44; para realizar el an&#225;lisis de fiabilidad&#44; utilizando el coeficiente de correlaci&#243;n intra-clase &#40;ICC&#41;&#46; Se utiliz&#243; el gr&#225;fico de Bland-Altman para medir el acuerdo entre ambos m&#233;todos&#44; para las mediciones de ICV pre- y postoperatorias&#46;</p></span> <span id="abst0035" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0045">Resultados</span><p id="spar0035" class="elsevierStyleSimplePara elsevierViewall">El ICV medio &#40;&#177;<span class="elsevierStyleHsp" style=""></span>DE&#41; fue de 1&#46;341&#44;1<span class="elsevierStyleHsp" style=""></span>ml<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>122&#44;1 &#40;manual&#41; y 1&#46;344&#44;11<span class="elsevierStyleHsp" style=""></span>ml<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>122&#44;6 &#40;SBI&#41; para los datos de la TC preoperatoria&#46; El ICV medio &#40;&#177;<span class="elsevierStyleHsp" style=""></span>DE&#41; fue de 1&#46;396&#44;4<span class="elsevierStyleHsp" style=""></span>ml<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>132&#44;4 &#40;manual&#41; y 1&#46;400&#44;53<span class="elsevierStyleHsp" style=""></span>ml<span class="elsevierStyleHsp" style=""></span>&#177;<span class="elsevierStyleHsp" style=""></span>132&#44;1 &#40;SBI&#41; para los datos de la TC postoperatoria&#46; No se encontr&#243; diferencia significativa en cuanto a las mediciones de ICV utilizando los m&#233;todos manual y SBI &#40;p<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>0&#44;983 para preoperatoria&#44; p<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>0&#44;960 para postoperatoria&#41;&#46; El ICC intra-evaluador reflej&#243; una correlaci&#243;n significativa&#59; ICC<span class="elsevierStyleHsp" style=""></span>&#61;<span class="elsevierStyleHsp" style=""></span>1&#46; El gr&#225;fico de Bland-Altman reflej&#243; un buen acuerdo entre el m&#233;todo manual y el m&#233;todo SBI&#46;</p></span> <span id="abst0040" class="elsevierStyleSection elsevierViewall"><span class="elsevierStyleSectionTitle" id="sect0050">Conclusi&#243;n</span><p id="spar0040" class="elsevierStyleSimplePara elsevierViewall">El m&#233;todo de interpolaci&#243;n basado en formas con estrategia de muestreo 1 de 10 proporcion&#243; resultados comparables a la hora de calcular el ICV&#44; en comparaci&#243;n con la segmentaci&#243;n manual&#46; Por tanto&#44; este m&#233;todo podr&#237;a utilizarse en el entorno cl&#237;nico para realizar estimaciones del ICV r&#225;pidas&#44; fidedignas y repetibles&#46;</p></span>"
        "secciones" => array:4 [
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            "titulo" => "Introducci&#243;n"
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            "titulo" => "M&#233;todos"
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            "titulo" => "Resultados"
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          3 => array:2 [
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            "titulo" => "Conclusi&#243;n"
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          "en" => "<p id="spar0045" class="elsevierStyleSimplePara elsevierViewall">The red circle shows the leakage due to the opening on the orbit &#40;left&#41;&#44; the intracranial area was corrected by a correction tool &#40;green line in a red circle&#41; and the corrected intracranial area is produced &#40;right&#41;&#46;</p>"
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          "en" => "<p id="spar0060" class="elsevierStyleSimplePara elsevierViewall">An axial slice of the post-operative CT data with skull defect after segmentation &#40;left&#41;&#46; The coronal view was viewed to assess for over-segmentation &#40;right&#41;&#46;</p>"
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          "en" => "<p id="spar0065" class="elsevierStyleSimplePara elsevierViewall">The 1-in-10 &#40;left&#41; sampling strategy for shape-based interpolation method which involves about 20 axial slices&#44; and after the interpolation process &#40;right&#41; which covers 200 slices&#46; The ICV was calculated automatically by summing all the intracranial areas&#46;</p>"
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                  <table border="0" frame="\n
                  \t\t\t\t\tvoid\n
                  \t\t\t\t" class=""><thead title="thead"><tr title="table-row"><th class="td-with-role" title="table-head ; entry_with_role_rowhead " align="left" valign="top" scope="col">Variable&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="" valign="top" scope="col">&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " colspan="3" align="center" valign="top" scope="col" style="border-bottom: 2px solid black">ICV measurement &#40;ml&#41;</th></tr><tr title="table-row"><th class="td" title="table-head  " align="" valign="top" scope="col">&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col"><span class="elsevierStyleItalic">n</span>&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col">Manual&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col">Shape-based interpolation&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col"><span class="elsevierStyleItalic">p</span>&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th></tr><tr title="table-row"><th class="td" title="table-head  " align="" valign="top" scope="col" style="border-bottom: 2px solid black">&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="" valign="top" scope="col" style="border-bottom: 2px solid black">&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col" style="border-bottom: 2px solid black">Mean &#40;SD&#41;&nbsp;\t\t\t\t\t\t\n
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                  \t\t\t\t</th><th class="td" title="table-head  " align="" valign="top" scope="col" style="border-bottom: 2px solid black">&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th></tr></thead><tbody title="tbody"><tr title="table-row"><td class="td" title="table-entry  " colspan="5" align="left" valign="top"><span class="elsevierStyleItalic">Methods</span></td></tr><tr title="table-row"><td class="td-with-role" title="table-entry ; entry_with_role_rowhead " align="left" valign="top"><span class="elsevierStyleHsp" style=""></span>Pre-op CT data&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</td><td class="td" title="table-entry  " align="char" valign="top">55&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</td><td class="td" title="table-entry  " align="char" valign="top">1341&#46;1 &#40;122&#46;1&#41;&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</td><td class="td" title="table-entry  " align="char" valign="top">1344&#46;1 &#40;122&#46;6&#41;&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</td><td class="td" title="table-entry  " align="char" valign="top">&#46;983&nbsp;\t\t\t\t\t\t\n
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                  \t\t\t\t</td><td class="td" title="table-entry  " align="char" valign="top">1396&#46;4 &#40;132&#46;4&#41;&nbsp;\t\t\t\t\t\t\n
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                  \t\t\t\t</td><td class="td" title="table-entry  " align="char" valign="top">&#46;960&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</td></tr></tbody></table>
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          "en" => "<p id="spar0095" class="elsevierStyleSimplePara elsevierViewall">Results of ICV measurements using the two different methods&#46;</p>"
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                  <table border="0" frame="\n
                  \t\t\t\t\tvoid\n
                  \t\t\t\t" class=""><thead title="thead"><tr title="table-row"><th class="td-with-role" title="table-head ; entry_with_role_rowhead " align="left" valign="top" scope="col">Intrarater&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " colspan="2" align="center" valign="top" scope="col" style="border-bottom: 2px solid black">Pre-op</th><th class="td" title="table-head  " colspan="2" align="center" valign="top" scope="col" style="border-bottom: 2px solid black">Post-op</th></tr><tr title="table-row"><th class="td" title="table-head  " align="" valign="top" scope="col" style="border-bottom: 2px solid black">&nbsp;\t\t\t\t\t\t\n
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                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col" style="border-bottom: 2px solid black">Significance&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col" style="border-bottom: 2px solid black">Correlation&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th><th class="td" title="table-head  " align="center" valign="top" scope="col" style="border-bottom: 2px solid black">Significance&nbsp;\t\t\t\t\t\t\n
                  \t\t\t\t</th></tr></thead><tbody title="tbody"><tr title="table-row"><td class="td-with-role" title="table-entry ; entry_with_role_rowhead " align="left" valign="top">1 and 2&nbsp;\t\t\t\t\t\t\n
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Vol. 30. Núm. 3.
Páginas 115-123 (mayo - junio 2019)
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Vol. 30. Núm. 3.
Páginas 115-123 (mayo - junio 2019)
Clinical Research
Shape-based interpolation method in measuring intracranial volume for pre- and post-operative decompressive craniectomy using open source software
Método de interpolación basado en formas para medir el volumen intracraneal en craneotomía descompresiva pre y postoperatoria utilizando un software de código abierto
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Johari Yap Abdullaha, Zainul Ahmad Rajiona,
Autor para correspondencia
zainulrajion@usm.my

Corresponding author.
, Arvind Gerard Martinb, Azlan Jaafarc, Abdul Rahman Izaini Ghanid, Jafri Malin Abdullahe
a Craniofacial Medical Imaging Research Group, School of Dental Sciences, Universiti Sains Malaysia, Kelantan, Malaysia
b Department of Neurosurgery, Hospital Tengku Ampuan Afzan, Jalan Air Putih, Kuantan, Pahang, Malaysia
c Faculty of Dentistry, Universiti Sains Islam Malaysia, Kuala Lumpur, Malaysia
d Department of Neurosciences, School of Medical Sciences, Universiti Sains Malaysia, Kelantan, Malaysia
e Centre for Neuroscience Services & Research, Universiti Sains Malaysia, Kelantan, Malaysia
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Table 1. Results of ICV measurements using the two different methods.
Table 2. Intrarater correlation of ICV measurements using ICC (n=55).
Table 3. Measurement of ICV with two different methods using ICC (n=55).
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Abstract
Introduction

Intracranial volume (ICV) is an important tool in the management of patients undergoing decompressive craniectomy (DC) surgery. The aim of this study was to validate ICV measurement applying the shape-based interpolation (SBI) method using open source software on computed tomography (CT) images.

Methods

The pre- and post-operative CT images of 55 patients undergoing DC surgery were analyzed. The ICV was measured by segmenting every slice of the CT images, and compared with estimated ICV calculated using the 1-in-10 sampling strategy and processed using the SBI method. An independent t test was conducted to compare the ICV measurements between the two different methods. The calculation using this method was repeated three times for reliability analysis using the intraclass correlations coefficient (ICC). The Bland–Altman plot was used to measure agreement between the methods for both pre- and post-operative ICV measurements.

Results

The mean ICV (±SD) were 1341.1±122.1ml (manual) and 1344.11±122.6ml (SBI) for the preoperative CT data. The mean ICV (±SD) were 1396.4±132.4ml (manual) and 1400.53±132.1ml (SBI) for the post-operative CT data. No significant difference was found in ICV measurements using the manual and the SBI methods (p=.983 for pre-op, and p=.960 for post-op). The intrarater ICC showed a significant correlation; ICC=1.00. The Bland–Altman plot showed good agreement between the manual and the SBI method.

Conclusion

The shape-based interpolation method with 1-in-10 sampling strategy gave comparable results in estimating ICV compared to manual segmentation. Thus, this method could be used in clinical settings for rapid, reliable and repeatable ICV estimations.

Keywords:
Shape-based interpolation method
Computed tomography
Decompressive craniectomy
Intracranial volume
Open source software
Resumen
Introducción

El volumen intracraneal (ICV) constituye una importante herramienta para el tratamiento de los pacientes sometidos a craneotomía descompresiva (CD). El objetivo de este estudio fue validar la medición del ICV aplicando el método de interpolación basado en formas (SBI), utilizando software de código abierto en las imágenes de tomografía computarizada (TC).

Métodos

Se analizaron las imágenes pre- y postoperatorias de TC de 55 pacientes sometidos a CD. Se midió el ICV segmentando cada corte de las imágenes de TC, comparándose con el ICV estimado calculado utilizando la estrategia de muestreo 1 de 10, y procesándose mediante el método SBI. Se realizó una prueba t independiente para comparar las mediciones de ICV entre los 2 métodos. Se repitió 3 veces el cálculo con este método, para realizar el análisis de fiabilidad, utilizando el coeficiente de correlación intra-clase (ICC). Se utilizó el gráfico de Bland-Altman para medir el acuerdo entre ambos métodos, para las mediciones de ICV pre- y postoperatorias.

Resultados

El ICV medio (±DE) fue de 1.341,1ml±122,1 (manual) y 1.344,11ml±122,6 (SBI) para los datos de la TC preoperatoria. El ICV medio (±DE) fue de 1.396,4ml±132,4 (manual) y 1.400,53ml±132,1 (SBI) para los datos de la TC postoperatoria. No se encontró diferencia significativa en cuanto a las mediciones de ICV utilizando los métodos manual y SBI (p=0,983 para preoperatoria, p=0,960 para postoperatoria). El ICC intra-evaluador reflejó una correlación significativa; ICC=1. El gráfico de Bland-Altman reflejó un buen acuerdo entre el método manual y el método SBI.

Conclusión

El método de interpolación basado en formas con estrategia de muestreo 1 de 10 proporcionó resultados comparables a la hora de calcular el ICV, en comparación con la segmentación manual. Por tanto, este método podría utilizarse en el entorno clínico para realizar estimaciones del ICV rápidas, fidedignas y repetibles.

Palabras clave:
Método de interpolación basado en formas
Tomografía computarizada
Craneotomía descompresiva
Volumen intracraneal
Software de código abierto

Artículo

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